Privacy-preserving machine learning has drawn increasingly attention recently, especially with kinds of privacy regulations come into force. Under such situation, Federated Learning (FL) appears to facilitate privacy-preserving joint modeling among multiple parties. Although many federated algorithms have been extensively studied, there is still a lack of secure and practical gradient tree boosting models (e.g., XGB) in literature. In this paper, we aim to build large-scale secure XGB under vertically federated learning setting. We guarantee data privacy from three aspects. Specifically, (i) we employ secure multi-party computation techniques to avoid leaking intermediate information during training, (ii) we store the output model in a distributed manner in order to minimize information release, and (iii) we provide a novel algorithm for secure XGB predict with the distributed model. Furthermore, by proposing secure permutation protocols, we can improve the training efficiency and make the framework scale to large dataset. We conduct extensive experiments on both public datasets and real-world datasets, and the results demonstrate that our proposed XGB models provide not only competitive accuracy but also practical performance.