Machine learning (ML) has gained significant adoption in Android malware detection to address the escalating threats posed by the rapid proliferation of malware attacks. However, recent studies have revealed the inherent vulnerabilities of ML-based detection systems to evasion attacks. While efforts have been made to address this critical issue, many of the existing defensive methods encounter challenges such as lower effectiveness or reduced generalization capabilities. In this paper, we introduce a novel Android malware detection method, MalPurifier, which exploits adversarial purification to eliminate perturbations independently, resulting in attack mitigation in a light and flexible way. Specifically, MalPurifier employs a Denoising AutoEncoder (DAE)-based purification model to preprocess input samples, removing potential perturbations from them and then leading to correct classification. To enhance defense effectiveness, we propose a diversified adversarial perturbation mechanism that strengthens the purification model against different manipulations from various evasion attacks. We also incorporate randomized "protective noises" onto benign samples to prevent excessive purification. Furthermore, we customize a loss function for improving the DAE model, combining reconstruction loss and prediction loss, to enhance feature representation learning, resulting in accurate reconstruction and classification. Experimental results on two Android malware datasets demonstrate that MalPurifier outperforms the state-of-the-art defenses, and it significantly strengthens the vulnerable malware detector against 37 evasion attacks, achieving accuracies over 90.91%. Notably, MalPurifier demonstrates easy scalability to other detectors, offering flexibility and robustness in its implementation.